Update meetings

We will have update meeting at 11am everyday

Add to your agenda

Updated link (To get added to the calendar, send an email to t.weinhart@utwente.nl):

https://calendar.google.com/event?action=TEMPLATE&tmeid=M2hwZjE5NGQ4ZzE4cHQwbTdjdGRiYWthc2RfMjAyMDA0MjBUMDkwMDAwWiB3ZWluaGFydEBt&tmsrc=weinhart%40gmail.com&scp=ALL

Joining

Join the 11am meeting (webex):

https://meetingsemea5.webex.com/meet/timoplath

PW: MDPM

Slack account

For this month we will be using slack:https://app.slack.com/client/TJ0BZKBNC/C012B175Z28 or the normal mercrydpm channel at https://mercurydpm.slack.com/archives/CHZQ527RA

Topics

Done:

How to create a video from Paraview (this contains only the initial setting ".pvsm" for particles, walls setting is not there)
Add logo into videos (done-one example has been updated at the end of this page)
Setup Confluence questions

Missing days

Please list the days you cannot attend the daily meeting.

Thomas: May 18

Timo: April 22, May 11-13

Julius: May 12, 19 (Equipment Design Course)

Ant: : April 29.

Hao: May 5.

Mitchel: May 4-5

Juan: May 13-14

Hongyang: May 12

Yousef: May 15 / 18-19

Discussion

Everyone, please curate your own section below yourself.


Teach	Do you still need skills to do you tasks? SVN, MercuryDPM basics, etc.
Slack	Do you have access to slack
Calendar	Did you get teh calendar invite? Anyone to add?
Juan	Documentation; Sydney demo programs for teaching - Convert MercurySimpleDemos to tutorials. MercurySimpleDemos: CubicCell.cpp FreeCooling2DPeriodicDemo.cpp FreeCooling3Demo.cpp FreeCoolingDemo.cpp FreeCoolingTryplePeriodic.cpp HeaterBoundaryTest.cpp HourGlass2DDemo.cpp HourGlass2DDemoMPI.cpp HourGlass3DDemo.cpp MinimalExampleDrum.cpp ParticleInclusion.cpp REV_IsotropicCompression.cpp REV_PurShear.cpp REV_SimpleShear.cpp HourGlassSelfTest.cpp Warning: This file cannot be moved Could I move these self tests to SelfTests directory? A// Yes FreeFallSelfTest.cpp InsertionBoundarySelfTestMPI.cpp MasterChuteUnitTestMPI.cpp ParticleCreationSelfTest.cpp FreeFallInteractionSelfTest.cpp : Warning: interaction file will take up a lot of disk space! Could I move these unit tests to UnitTests directory? A// Yes PeriodicBoundaryUnitTestMPI.cpp PeriodicChuteUnitTestMPI.cpp PeriodicWallsUnitTest.cpp ParallelUnitTest.cpp HGridUnitTest.cpp Which demo tests does @Anthony Thornton want for teaching? R// Job MDPM 301: Update Hour Glass Demo. The description of this job is: This code is written in a weird way with respect to what N. To update the structure, some changes need to be done. Maybe I could rewrite this code using the tutorial format. Job MDPM 282: Write a tutorial on how to create your own code Documentation: Write your own code. Updated. Job 306: Add a review doc of what files can be turned on Job 304: Hourglass does not seem able to write multiple data files. I've created a new beginner tutorial, tutorial11. This tutorial shows how to work with axisymmetric walls inside a cylindrical domain. Furthermore, it is based on the hourglass demo. This tutorial can write multiple data files (Job 304).
Thomas	Resurrect old Driver code directories (SerializedDriver, Leidenfrost, GranularJet, Avalanching, CartesianShearCell, Segregation), see r4549 @Thomas Weinhart Contraction directory cannot be resurrected, make a new Contraction driver. @Anthony Thornton look at Chute directory, Codes are extremely old (#include "scr/Chute.h") Send Juan paper on Chargedbonded. Merge completed features from my Branches (MercuryLab, ResurrectOldDriverCodes/) into Trunk, see r4522, r4549 @Julius Mbaziira Check whether SelfTestMPI.cpp/UnitTestMPI.cpp is executed if MPI=ON No, they are never executed. They need to be renamed *MPI2Test.cpp Fixed "Mathjax not displayed" issue in documentation, see r4554 Add Test rules to coding style Clean up Doxygen section in coding style, add /ref Update license Discuss: HertzMindlin tied together, or shear modulus updated from Hertz.
Ant	Change settings of MercuryDPM website [done] Make mercurydpm forward-only email adresses work (info, personal, etc) Backup script for web pages Finish off oomph-lib testing branch, so we have an oomphlib branch we can commit to
Timo	Documentation Mindlin Enhance Mindlin Implement a collisionselftest for mindlin Walls doc Doxygen infinite loop script (now works in background):
Mitchel	Coupling; look at open jobs at JIRA (started) Tutorial on 2D and 3D parameter studies (JIRA MDPM - 307) Code Documentation Validation
Hong	Make the structure of the coupled codes consistent Clean up my branches to be merged with Mitchel's CoupledProblem class and how to inherit Volume coupling Match the current velocity (Augmented) Lagrange multiplier Merge implicit and explicit branches into the main coupling branch Surface coupling Smooth particle-finite element contacts Triangulated walls with prescribed velocity from Oomph-lib Coarse-Grained coupling force Marnix \mu(I) rheology Works on a CG converter tool (e.g. stat2vtu.py). In Tools
Yousef	Clean up melting, add test cases (PS: My branch should not be merged back till the work is published). Coding style and format Error checks Test Cases: .... Update ThermalParticleVtkWriter: to avoid dynamic_cast! JIRA jobs: I noticed some jobs are repeated: Do not delete, just link them (e.g. latex pb in documentations). Test failing on cluster and Windows 10 [MDPM-311] : I ran fullTest on Win10 and cluster, all passed. Add Doxygen section to the "Coding style of the kernel" on the website [MDPM-95]: The section already on the website, do we need to add it in the documentation? make separate VTKWriter class for Wall/Interaction VTK writer [MDPM-240]: There is also done, right? -> a unit test is needed. Adhesive particle contacts increases simulation time [MDPM-323]: which adhesive species? -> we need to contact Nikzad Falahati, Anthony knows him. ..
Hao	Check the StressStrainControlBoundary: Check the comment of each function implemented in this boundary and modify the documentation. Add a detailed version of the tutorial of one deformation mode. (New page on Isotropic compression.) Update the detailed pdf and it to the additional document. Maybe add more videos and tutorials on different deformation modes: PureShear, SimpleShear, (Volume conserving, no stress control activated) SimpleShear, (Changing volume, activate the stress control) How to deal with the input data folder? Reference it? Or make them separate folders but then need to check all the other folders also. Please don't copy input data, instead refer to the source directory using getMercurySourceDir in CMakeDefinitions. Include the path in the cpp file and read the input data from there, so avoid copying. Here is the issue of MPI without c++ binding issue. I think it is general in all the new version of openmpi, not only on mac. can someone test this with newest openmpi on either windows or linux? Added the logo with slogan to the NewDocumentation branch.
Julius	Converting demos to tutorial (Homogeneous and Inhomogeneous Cooling States, F-C-Demos)

Todos

Make a separate discussion on the coupling branch [Hong, Mitchel, Thomas, Anthony]; Tuesday after 11am meeting

MercuryMonth 2020